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Answer: help in changing Y scale in R
Answer: Set the same Y scale for different plots
C: Demultiplexing reads with index present in the labels
C: Demultiplexing reads with index present in the labels
Comment: Search within posts based on tags using the Biostars API
Answer: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
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Recent Replies
Comment: Set the same Y scale for different plots
by
zx8754
11k
I think we need min/max from both datasets.
Comment: Set the same Y scale for different plots
by
zx8754
11k
Or use *range*: my_y_limits <- range(c(mtcars$cyl, mtcars$mpg)) my_y_limits # [1] 4.0 33.9
Comment: UMI-Tools knee-method has great influence on the results of white list
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Assa Yeroslaviz
★ 1.9k
Hi @iansudbery, I have seen you're recommending to use the Alevin-fry pipeline now instead of umi_tools. But I couldn't find out, how to us…
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by
Bálint
▴ 10
That is a cool workaround and exactly what I was looking for! Thank you very much! :-)
Comment: How to use pacbio reads to join contigs
by
Wyclif
• 0
Hi, did you find the solution for this? I am new to bioinformatics here and I would like to use DBG2OLC to combine the contigs into scaffol…
Comment: polygenic risk score
by
ashaneev07
▴ 20
Can't we calculate the prs of a single patient data with respect to GWAS data for predicting the risk for particular diseases?
Answer: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
Gordon Smyth
★ 7.2k
It is very common for studies like this to show no significant DE. Human studies like this where comparisons are made between diseases and …
Comment: Invalid CIGAR after using bam clipOverlap
by
MboiTui
▴ 20
update. The error persists. With ValidateSamFile I get no error until i use MarkDuplicates. Then for the MarkDuplicates output I get: …
Comment: when I use htslib to write a bam. Error of "truncated file" shows by samtools
by
Aaron
▴ 10
Thanks very much.
Answer: help in changing Y scale in R
by
LauferVA
4.2k
Hello @ab33b6d7 , Below is approximately the code block you provided, with a few additional lines added. Each of the new lines has > …
Comment: 2 PhD Students in single-cell bioinformatics
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Uzma
• 0
I want to apply for this PhD position. I did MSc Zoology and MPhil biosciences.
Comment: Rseqc infer_experiment.py: 0 usable reads sampled and unknown data type
by
mazegriff
• 0
Hi pubsurfted, I ran into the same issue using a reference transcriptome with HISAT2 from the Ensembl database. For others with similar e…
Comment: Intersection of multiple vcf files
by
Jeremy Leipzig
22k
isec is pretty awful for these set operations - especially since individual samples present alleles, not lines in a VCF file. If you can co…
Answer: Set the same Y scale for different plots
by
Medhat
9.7k
Maybe try to calculate min and max combined_min <- min(a_filtered$value, a_filtered_tv$value, na.rm = TRUE) combined_max <- max(a_…
Answer: help in changing Y scale in R
by
ATpoint
82k
Use `+ylim(c(lower, upper))`. Either set manually, or query both `a_filtered` and `a_filtered_tv` for the minimum and maximum values that g…
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